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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
68
total RNA-seq
47
ATAC-seq
29
ChIP-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
162
Transcription
74
DNA accessibility
29
DNA binding
9
DNA methylation
3
3D chromatin structure
Target of assay
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
18
control
11
transcription factor
5
RNA binding protein
Date released
92
August, 2021
66
February, 2021
36
February, 2023
27
June, 2019
20
July, 2019
15
April, 2019
8
May, 2019
7
March, 2020
3
February, 2020
3
May, 2021
3
October, 2019
Available data
164
tsv
140
bam
114
bigWig
85
bed narrowPeak
34
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
280
Homo sapiens
Biosample type
213
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
678
liver
575
connective tissue
507
pancreas
457
adipose tissue
298
kidney
280
heart
158
bone element
145
blood vessel
145
vasculature
119
artery
91
epithelium
81
brain
73
limb
60
blood
60
bodily fluid
57
musculature of body
54
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
280
AMP
Genome assembly (visualization)
157
GRCh38
118
hg19
Lab
280
AMP-T2D consortium
target.investigated_as!
histone
biosample_type!
primary cell
BIOSAMPLE
ASSAY
280 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
3
2
11
3
4
1
1
1
coronary artery
1
36
3
2
heart
1
4
2
18
1
1
1
heart right ventricle
17
1
2
1
2
1
1
right cardiac atrium
18
1
1
1
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cell line
smooth muscle cell of the coronary artery
52
8
6
in vitro differentiated cells
cardiac fibroblast
1
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