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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
404
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
337
transcription factor
82
recombinant protein
63
RNA binding protein
62
control
30
chromatin remodeller
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
300
November, 2017
61
November, 2018
28
December, 2018
22
January, 2019
Available data
547
bam
485
bigWig
411
fastq
369
bed narrowPeak
335
bigBed narrowPeak
119
tsv
45
bed broadPeak
45
bigBed broadPeak
9
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
411
Homo sapiens
Biosample type
411
cell line
336
primary cell
304
tissue
76
in vitro differentiated cells
2
stem cell
Organ
352
liver
59
blood
59
bodily fluid
Project
411
AMP
Genome assembly (visualization)
351
hg19
307
GRCh38
Lab
411
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone
BIOSAMPLE
ASSAY
411 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
345
5
1
1
GM12878
59
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