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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
21
ATAC-seq
1
DNase-seq
Assay category
32
DNA binding
22
DNA accessibility
Target of assay
histone
78
histone modification
40
narrow histone mark
37
broad histone mark
32
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
18
August, 2017
12
August, 2021
11
December, 2017
5
November, 2019
4
May, 2021
2
February, 2023
2
October, 2019
Available data
212
bam
181
bigWig
131
tsv
76
fastq
54
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
54
Homo sapiens
Biosample type
460
tissue
369
cell line
79
primary cell
54
in vitro differentiated cells
Organ
20
connective tissue
3
embryo
3
epithelium
2
liver
1
pancreas
Project
54
AMP
Genome assembly (visualization)
54
hg19
50
GRCh38
Lab
50
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
Audit category:
10
inconsistent control read length
target.investigated_as!
histone
BIOSAMPLE
ASSAY
54 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
17
1
1
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes
3
pancreatic endoderm
3
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