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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
49
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
138
Transcription
49
DNA binding
43
DNA accessibility
4
3D chromatin structure
Target of assay
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
control
11
RNA binding protein
3
chromatin remodeller
Date released
105
May, 2021
26
February, 2021
23
August, 2017
21
August, 2021
16
February, 2023
15
February, 2018
11
December, 2017
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
182
bam
181
bigWig
131
tsv
54
bed narrowPeak
54
fastq
12
bed bed3+
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
4
tagAlign
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
245
Homo sapiens
Biosample type
1958
tissue
816
primary cell
541
cell line
245
in vitro differentiated cells
7
stem cell
Organ
52
connective tissue
10
embryo
5
epithelium
2
liver
1
adipose tissue
1
heart
1
pancreas
Project
245
AMP
Genome assembly (visualization)
215
hg19
182
GRCh38
4
hg18
Lab
216
AMP-T2D consortium
22
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
target.investigated_as!
histone
control
BIOSAMPLE
ASSAY
245 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
5
22
8
1
1
embryonic stem cell
7
12
6
1
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
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