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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
42
ChIP-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
436
Transcription
288
DNA accessibility
48
DNA methylation
42
DNA binding
10
3D chromatin structure
Target of assay
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
22
July, 2019
20
August, 2017
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
406
bam
383
bigWig
335
fastq
270
tsv
153
zippedFastqFolder
79
bed narrowPeak
62
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
841
Homo sapiens
Biosample type
2134
tissue
841
primary cell
624
cell line
282
in vitro differentiated cells
8
stem cell
Organ
334
epithelium
288
pancreas
30
connective tissue
23
kidney
19
vasculature
17
brain
15
blood vessel
10
heart
10
liver
8
blood
8
bodily fluid
7
vein
5
musculature of body
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
396
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
388
hg19
338
GRCh38
Lab
391
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
31
audit script error
target.investigated_as!
histone
assay_title!
RRBS
BIOSAMPLE
ASSAY
841 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
31
6
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
1
monocyte
54
15
1
1
exocrine cell
39
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