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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
single cell RNA-seq
56
snATAC-seq
47
WGBS
42
ChIP-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
288
DNA accessibility
249
Transcription
58
DNA methylation
42
DNA binding
10
3D chromatin structure
Target of assay
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
101
May, 2022
88
February, 2023
88
May, 2021
40
September, 2018
36
February, 2021
36
June, 2019
28
July, 2019
21
August, 2017
19
September, 2020
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
Available data
306
bam
283
bigWig
208
fastq
170
tsv
101
zippedFastqFolder
79
bed narrowPeak
62
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
tagAlign
1
bed bed3
1
tar
Organism
664
Homo sapiens
Biosample type
1971
tissue
664
primary cell
624
cell line
280
in vitro differentiated cells
8
stem cell
Organ
270
epithelium
214
pancreas
27
connective tissue
26
kidney
20
vasculature
15
blood vessel
15
brain
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
304
AMP
239
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
298
hg19
238
GRCh38
Lab
299
AMP-T2D consortium
239
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
31
audit script error
30
inconsistent ontology term
target.investigated_as!
histone
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
664 results
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total RNA-seq
ATAC-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
31
6
1
monocyte
54
15
1
1
pancreatic beta cell
21
23
16
6
1
Langerhans cell
48
exocrine cell
39
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