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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1219
total RNA-seq
460
ATAC-seq
354
single cell RNA-seq
322
ChIP-seq
209
DNase-seq
83
snATAC-seq
74
WGBS
42
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
1
DNAme array
Assay category
1591
Transcription
757
DNA accessibility
322
DNA binding
96
DNA methylation
26
3D chromatin structure
Target of assay
865
histone modification
histone
439
narrow histone mark
425
broad histone mark
222
control
104
transcription factor
38
RNA binding protein
3
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
504
February, 2021
313
May, 2020
199
June, 2019
193
May, 2022
182
August, 2017
179
February, 2023
173
August, 2021
168
July, 2018
128
May, 2021
108
July, 2019
87
October, 2019
59
September, 2020
49
April, 2018
47
September, 2023
46
October, 2018
43
December, 2017
41
September, 2018
40
November, 2019
39
March, 2020
28
May, 2019
27
November, 2018
25
February, 2020
20
April, 2019
19
April, 2020
18
November, 2017
16
January, 2021
15
May, 2023
11
October, 2017
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
5
March, 2019
5
May, 2024
3
August, 2018
3
June, 2018
3
October, 2022
2
January, 2018
1
August, 2022
1
January, 2019
1
March, 2023
Available data
1848
bam
1634
bigWig
1346
tsv
640
fastq
544
bed narrowPeak
311
bigBed narrowPeak
227
bed bed3+
211
bed broadPeak
209
bigBed broadPeak
txt
153
zippedFastqFolder
64
xls
54
tagAlign
35
bed bedMethyl
35
bigBed bedMethyl
17
hic
14
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tar
Organism
2841
Homo sapiens
Biosample type
1993
tissue
851
primary cell
623
cell line
279
in vitro differentiated cells
8
stem cell
Organ
714
pancreas
545
connective tissue
458
adipose tissue
355
epithelium
303
liver
243
kidney
229
heart
99
brain
99
vasculature
94
blood vessel
73
limb
71
bone element
62
musculature of body
58
eye
55
artery
20
lung
19
nerve
19
spleen
18
ureter
12
skeleton
8
blood
8
bodily fluid
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2304
AMP
324
HPAP
149
T1D
47
KPMP
19
LungMap
1
ITG
Genome assembly (visualization)
1715
hg19
1704
GRCh38
Lab
2140
AMP-T2D consortium
324
Klaus Kaestner, Upenn
171
Kyle Gaulton, UCSD
85
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
42
inconsistent ontology term
34
audit script error
27
inconsistent control
Audit category:
18
missing controlled_by
target.investigated_as!
histone
files.file_type!
txt
BIOSAMPLE
ASSAY
2844 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
DNase-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
DNAme array
tissue
islet of Langerhans
286
68
6
20
1
7
4
3
1
1
4
adipose tissue
382
3
1
3
1
liver
167
20
1
81
2
3
1
1
1
1
kidney
75
51
7
13
6
1
1
1
bone tissue
58
+ See 117 more…
primary cell
pancreatic alpha cell
52
35
12
6
31
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
6
16
1
monocyte
54
15
1
1
exocrine cell
39
+ See 93 more…
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