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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
67
ChIP-seq
17
ATAC-seq
1
DNase-seq
Assay category
127
Transcription
67
DNA binding
18
DNA accessibility
Target of assay
histone
79
histone modification
41
narrow histone mark
37
broad histone mark
37
transcription factor
30
control
6
RNA binding protein
3
chromatin remodeller
Date released
84
May, 2021
29
August, 2017
24
August, 2021
23
February, 2018
22
February, 2021
19
December, 2017
5
November, 2019
4
October, 2019
2
March, 2020
Available data
212
bam
181
bigWig
131
tsv
76
fastq
54
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
212
Homo sapiens
Biosample type
1426
tissue
546
cell line
406
primary cell
212
in vitro differentiated cells
1
stem cell
Organ
34
connective tissue
16
embryo
9
epithelium
3
liver
2
pancreas
1
heart
Project
212
AMP
Genome assembly (visualization)
187
GRCh38
187
hg19
Lab
212
AMP-T2D consortium
Audit category:
99
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
target.investigated_as!
histone
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
212 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
28
1
neural progenitor cell
7
7
10
cardiac precursors (cardiac muscle cell)
19
1
pancreatic endoderm
4
8
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