Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
4
ChIP-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
4
DNA binding
Target of assay
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
Date released
35
June, 2019
10
July, 2019
5
August, 2017
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
43
bam
41
bigWig
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
tagAlign
1
txt
Organism
61
Homo sapiens
Biosample type
55
tissue
6
primary cell
Organ
791
pancreas
661
liver
603
connective tissue
458
adipose tissue
428
epithelium
324
kidney
285
heart
159
bone element
159
vasculature
154
blood vessel
115
artery
80
brain
73
limb
68
blood
68
bodily fluid
61
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
61
AMP
Genome assembly (visualization)
46
hg19
40
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
target.investigated_as!
histone
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
61 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
Hi-C
total RNA-seq
RRBS
ChIP-seq
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
1
4
1
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
+ See 3 more…
primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
See all biosamples
Download