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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
total RNA-seq
10
ChIP-seq
Assay category
14
Transcription
10
DNA binding
Target of assay
histone
12
histone modification
8
narrow histone mark
7
control
4
broad histone mark
3
transcription factor
Date released
8
August, 2021
7
December, 2017
7
February, 2018
2
May, 2021
Available data
24
bam
18
bigWig
15
fastq
14
tsv
3
bed narrowPeak
1
bed bed3+
Organism
24
Homo sapiens
Biosample type
16
in vitro differentiated cells
8
cell line
Organ
597
liver
550
connective tissue
544
pancreas
439
adipose tissue
207
epithelium
120
heart
103
vasculature
101
blood vessel
78
artery
66
bone element
59
blood
59
bodily fluid
45
brain
35
kidney
30
limb
24
embryo
17
spleen
16
nerve
10
musculature of body
8
skeleton
3
vein
2
eye
1
pericardium
Project
24
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
24
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent control read length
target.investigated_as!
histone
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
24 results
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total RNA-seq
ChIP-seq
in vitro differentiated cells
pancreatic endoderm
4
8
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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