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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
430
ChIP-seq
104
total RNA-seq
10
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
430
DNA binding
104
Transcription
12
DNA accessibility
1
DNA methylation
Target of assay
349
transcription factor
89
recombinant protein
76
control
64
RNA binding protein
histone
35
histone modification
30
chromatin remodeller
18
broad histone mark
17
narrow histone mark
2
other context
2
other post-translational modification
Date released
299
November, 2017
95
February, 2021
61
November, 2018
27
December, 2018
22
January, 2019
22
October, 2019
8
August, 2021
5
November, 2019
4
March, 2020
4
May, 2021
Available data
547
bam
485
bigWig
411
fastq
369
bed narrowPeak
335
bigBed narrowPeak
119
tsv
45
bed broadPeak
45
bigBed broadPeak
9
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
547
Homo sapiens
Biosample type
1442
tissue
547
cell line
406
primary cell
212
in vitro differentiated cells
1
stem cell
Organ
351
liver
66
artery
66
blood vessel
66
heart
66
vasculature
59
blood
59
bodily fluid
44
pancreas
39
epithelium
15
kidney
8
embryo
Project
545
AMP
2
T1D
Genome assembly (visualization)
475
hg19
431
GRCh38
Lab
547
AMP-T2D consortium
Audit category:
50
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone
BIOSAMPLE
ASSAY
547 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
344
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
59
EndoC_BH1
3
33
1
H1-hESC
8
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