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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
79
ChIP-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
89
Transcription
79
DNA binding
10
DNA accessibility
2
DNA methylation
Target of assay
103
histone modification
histone
52
narrow histone mark
49
broad histone mark
47
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
572
February, 2021
317
November, 2017
256
May, 2020
199
June, 2019
191
May, 2021
180
August, 2017
164
July, 2018
87
November, 2018
82
July, 2019
77
October, 2019
63
December, 2017
49
April, 2018
49
November, 2019
46
October, 2018
40
September, 2018
34
December, 2018
33
August, 2021
28
May, 2019
24
May, 2022
23
February, 2018
23
January, 2019
20
April, 2019
13
March, 2020
11
September, 2017
9
October, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
185
fastq
180
bam
150
bigWig
89
tsv
35
bed narrowPeak
21
bed bed3+
12
bigBed narrowPeak
11
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
4
bed broadPeak
4
bigBed broadPeak
Organism
179
Homo sapiens
Biosample type
131
tissue
29
in vitro differentiated cells
20
primary cell
Organ
116
pancreas
45
connective tissue
16
adipose tissue
15
epithelium
14
liver
Project
180
AMP
Genome assembly (visualization)
150
hg19
147
GRCh38
Lab
180
AMP-T2D consortium
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
histone
BIOSAMPLE
ASSAY
180 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
89
8
1
1
liver
13
white adipose tissue
12
adipose tissue
1
2
pancreas
2
+ See 2 more…
in vitro differentiated cells
adipocyte
28
1
primary cell
pancreatic alpha cell
6
1
pancreatic beta cell
6
1
skeletal muscle myoblast
3
2
pancreatic acinar cell
1
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