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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
901
total RNA-seq
257
ChIP-seq
174
DNase-seq
64
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
923
Transcription
257
DNA binding
242
DNA accessibility
17
DNA methylation
Target of assay
466
histone modification
histone
243
narrow histone mark
222
broad histone mark
167
control
89
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
166
May, 2020
160
June, 2019
131
August, 2017
116
July, 2018
64
July, 2019
44
October, 2018
43
December, 2017
41
October, 2019
39
November, 2019
38
May, 2021
26
May, 2019
26
November, 2018
24
May, 2022
20
April, 2019
12
November, 2017
9
October, 2017
7
December, 2018
7
March, 2020
6
April, 2018
6
September, 2017
1
January, 2019
1
March, 2019
Available data
1439
bam
1248
bigWig
1071
tsv
435
bed narrowPeak
304
fastq
246
bigBed narrowPeak
190
bed bed3+
175
bed broadPeak
173
bigBed broadPeak
157
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1438
Homo sapiens
Biosample type
1439
tissue
547
cell line
403
primary cell
212
in vitro differentiated cells
1
stem cell
Organ
497
connective tissue
439
adipose tissue
370
pancreas
239
liver
78
kidney
73
heart
66
bone element
66
limb
63
brain
38
musculature of body
33
blood vessel
33
vasculature
18
nerve
18
spleen
18
ureter
14
artery
8
skeleton
eye
Project
1439
AMP
Genome assembly (visualization)
1244
GRCh38
1232
hg19
Lab
1414
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
18
missing controlled_by
target.investigated_as!
histone
organ_slims!
eye
BIOSAMPLE
ASSAY
1439 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
1
2
islet of Langerhans
266
14
1
38
6
1
liver
147
78
2
1
bone tissue
58
body of pancreas
2
18
4
4
2
2
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