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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
4
GRO-seq
1
DNase-seq
1
pCHi-C
Assay category
55
DNA binding
Transcription
1
DNA accessibility
Target of assay
histone
65
histone modification
33
narrow histone mark
33
transcription factor
31
broad histone mark
22
control
6
RNA binding protein
3
chromatin remodeller
Date released
29
August, 2017
19
December, 2017
8
February, 2018
4
January, 2018
1
August, 2018
Available data
85
bam
61
fastq
54
bed narrowPeak
54
bigWig
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
2
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
61
Homo sapiens
Biosample type
406
cell line
201
tissue
88
primary cell
61
in vitro differentiated cells
2
stem cell
Organ
30
connective tissue
11
embryo
5
epithelium
3
liver
1
adipose tissue
Project
61
AMP
Genome assembly (visualization)
39
GRCh38
39
hg19
4
hg18
Lab
61
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
target.investigated_as!
histone
assay_slims!
Transcription
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
GRO-seq
DNase-seq
pCHi-C
in vitro differentiated cells
adipocyte
28
1
pancreatic endoderm
8
1
definitive endodermal cell
4
1
primitive gut cell
4
1
Posterior foregut
3
1
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