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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
628
ChIP-seq
243
total RNA-seq
128
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
17
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
12
DNA accessibility
1
3D chromatin structure
Date released
9
November, 2018
3
August, 2017
1
December, 2018
Available data
214
bigWig
209
bam
209
bed bed3+
209
bed narrowPeak
209
bigBed narrowPeak
206
bed broadPeak
206
bigBed broadPeak
23
hic
20
bedpe bed3+
13
fastq
5
hdf5
3
cool
1
bedpe
Organism
13
Homo sapiens
Biosample type
10
tissue
1
cell line
1
in vitro differentiated cells
1
primary cell
Organ
4
liver
3
pancreas
2
brain
2
connective tissue
1
adipose tissue
1
spleen
Project
13
AMP
Genome assembly (visualization)
12
hg19
11
GRCh38
Lab
13
AMP-T2D consortium
target.investigated_as!
histone
BIOSAMPLE
ASSAY
13 results
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DNase-seq
Hi-C
tissue
body of pancreas
2
brain
2
liver
2
islet of Langerhans
1
omental fat pad
1
+ See 2 more…
cell line
HepG2
1
in vitro differentiated cells
adipocyte
1
primary cell
skeletal muscle myoblast
1
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