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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
3
WGBS
2
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
36
DNA binding
3
DNA accessibility
3
DNA methylation
Target of assay
19
control
17
transcription factor
5
RNA binding protein
histone
1
histone modification
1
narrow histone mark
Date released
23
October, 2018
17
August, 2017
1
August, 2018
1
November, 2018
1
October, 2017
Available data
441
bam
423
bigWig
401
tsv
43
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
43
Homo sapiens
Biosample type
42
tissue
1
in vitro differentiated cells
Organ
420
liver
371
pancreas
206
epithelium
75
connective tissue
43
adipose tissue
32
blood
32
bodily fluid
15
embryo
11
brain
11
spleen
4
vasculature
2
blood vessel
2
musculature of body
Project
43
AMP
Genome assembly (visualization)
22
GRCh38
20
hg19
Lab
43
AMP-T2D consortium
Audit category:
12
missing controlled_by
target.investigated_as!
histone
month_released!
December, 2018
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
tissue
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
white adipose tissue
12
adipose tissue
1
3
in vitro differentiated cells
white fat cell
1
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