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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
79
ChIP-seq
5
ATAC-seq
4
RRBS
4
WGBS
3
DNase-seq
1
FAIRE-seq
Assay category
89
Transcription
79
DNA binding
9
DNA accessibility
8
DNA methylation
Target of assay
103
histone modification
histone
52
narrow histone mark
49
broad histone mark
47
transcription factor
31
control
8
RNA binding protein
3
chromatin remodeller
Date released
November, 2017
185
August, 2017
88
November, 2018
76
February, 2023
63
December, 2017
50
July, 2018
45
February, 2021
44
April, 2018
44
October, 2018
41
September, 2018
41
September, 2020
35
December, 2018
24
May, 2022
23
February, 2018
23
January, 2019
11
September, 2017
10
October, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
185
fastq
180
bam
150
bigWig
89
tsv
35
bed narrowPeak
21
bed bed3+
12
bigBed narrowPeak
11
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
4
bed broadPeak
4
bigBed broadPeak
Organism
184
Homo sapiens
Biosample type
136
tissue
29
in vitro differentiated cells
20
primary cell
Organ
116
pancreas
46
connective tissue
17
adipose tissue
16
liver
15
epithelium
2
musculature of body
Project
185
AMP
Genome assembly (visualization)
153
hg19
147
GRCh38
Lab
185
AMP-T2D consortium
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
histone
month_released!
November, 2017
BIOSAMPLE
ASSAY
185 results
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total RNA-seq
ChIP-seq
ATAC-seq
RRBS
WGBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
89
8
1
1
liver
13
1
1
white adipose tissue
12
adipose tissue
1
3
pancreas
2
+ See 3 more…
in vitro differentiated cells
adipocyte
28
1
primary cell
pancreatic alpha cell
6
1
pancreatic beta cell
6
1
skeletal muscle myoblast
3
1
1
pancreatic acinar cell
1
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