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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
total RNA-seq
18
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
60
Transcription
29
DNA accessibility
Target of assay
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
68
May, 2021
May, 2020
23
February, 2023
16
January, 2021
4
March, 2020
Available data
53
bam
53
bigWig
53
tsv
Organism
111
Homo sapiens
Biosample type
75
primary cell
29
tissue
7
cell line
Organ
30
pancreas
8
blood
8
bodily fluid
2
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
3095
AMP
111
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
53
GRCh38
53
hg19
Lab
107
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
target.investigated_as!
histone
lab.title!
Klaus Kaestner, Upenn
month_released!
May, 2020
BIOSAMPLE
ASSAY
111 results
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total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
51
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
+ See 11 more…
tissue
islet of Langerhans
7
6
11
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
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