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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
ChIP-seq
6
Hi-C
6
total RNA-seq
2
RRBS
2
small RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA binding
2
DNA methylation
Target of assay
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
35
June, 2019
8
July, 2019
5
August, 2017
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
43
bam
41
bigWig
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
txt
Organism
59
Homo sapiens
Biosample type
54
tissue
5
primary cell
Organ
686
liver
637
pancreas
603
connective tissue
457
adipose tissue
320
kidney
288
heart
273
epithelium
163
vasculature
159
blood vessel
159
bone element
121
artery
97
brain
72
limb
68
blood
68
bodily fluid
59
musculature of body
57
eye
25
embryo
20
lung
19
nerve
18
ureter
17
spleen
16
skeleton
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
Genome assembly (visualization)
43
hg19
39
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
target.investigated_as!
histone
lab.title!
Klaus Kaestner, Upenn
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
59 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
skeletal muscle tissue
3
1
2
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
1
1
1
skeletal muscle cell
1
1
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