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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
408
ChIP-seq
130
DNase-seq
27
ATAC-seq
4
FAIRE-seq
Assay category
408
DNA binding
161
DNA accessibility
Target of assay
403
transcription factor
histone
369
histone modification
230
broad histone mark
139
narrow histone mark
91
RNA binding protein
81
recombinant protein
34
chromatin remodeller
5
other context
5
other post-translational modification
Date released
239
November, 2017
112
June, 2019
73
November, 2018
33
December, 2017
30
December, 2018
15
October, 2018
14
January, 2019
14
September, 2018
12
August, 2017
11
October, 2019
5
April, 2019
5
September, 2017
4
May, 2019
1
July, 2019
1
November, 2020
Available data
2373
bam
2042
bigWig
1464
tsv
934
fastq
756
bed narrowPeak
569
bigBed narrowPeak
177
bed broadPeak
177
bigBed broadPeak
166
bed bed3+
90
txt
77
tagAlign
32
bed bedMethyl
32
bigBed bedMethyl
18
bedpe bed3+
16
hic
12
bed bed3
5
hdf5
4
bed bedgraph
4
tar
3
csv
2
ibed
Organism
569
Homo sapiens
Biosample type
334
cell line
180
tissue
50
primary cell
5
in vitro differentiated cells
Organ
323
liver
kidney
53
blood
53
bodily fluid
47
epithelium
42
pancreas
38
heart
36
brain
36
limb
33
musculature of body
19
connective tissue
18
ureter
17
vasculature
14
blood vessel
9
adipose tissue
7
spleen
5
artery
5
eye
3
vein
2
nerve
Project
569
AMP
Genome assembly (visualization)
549
hg19
527
GRCh38
Lab
569
AMP-T2D consortium
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
histone
organ_slims!
kidney
BIOSAMPLE
ASSAY
569 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
280
GM12878
53
Panc1
1
tissue
liver
33
2
heart
18
muscle of arm
17
brain
14
body of pancreas
9
4
+ See 34 more…
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
cardiac fibroblast
1
3
pancreatic ductal cell
4
+ See 14 more…
in vitro differentiated cells
adipocyte
1
2
hepatocyte
2
See all biosamples
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