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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
total RNA-seq
31
ATAC-seq
10
ChIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
1
RNA microarray
Assay category
38
Transcription
32
DNA accessibility
10
DNA binding
1
3D chromatin structure
Target of assay
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
6
control
4
transcription factor
3
RNA binding protein
1
chromatin remodeller
Date released
26
February, 2021
24
May, 2021
15
February, 2023
6
November, 2019
5
December, 2017
4
March, 2020
2
August, 2021
2
October, 2019
1
December, 2019
Available data
48
bam
43
bigWig
40
tsv
18
bed narrowPeak
5
fastq
3
bigBed narrowPeak
2
tagAlign
1
bedpe bed3+
1
hic
Organism
84
Homo sapiens
Biosample type
primary cell
61
cell line
15
tissue
9
in vitro differentiated cells
Organ
610
liver
571
connective tissue
457
adipose tissue
438
pancreas
280
heart
158
bone element
145
blood vessel
145
vasculature
119
artery
107
kidney
85
epithelium
81
brain
73
limb
60
blood
60
bodily fluid
57
musculature of body
54
eye
25
embryo
19
nerve
19
spleen
18
ureter
16
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
83
AMP
2
T1D
Genome assembly (visualization)
57
hg19
42
GRCh38
Lab
85
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
61
inconsistent ontology term
1
audit script error
target.investigated_as!
histone
biosample_type!
primary cell
BIOSAMPLE
ASSAY
85 results
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total RNA-seq
ATAC-seq
ChIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
RNA microarray
cell line
EndoC_BH1
33
19
3
2
1
1
glomerular visceral epithelial cell
1
1
tissue
pigmented layer of retina
2
12
renal glomerulus
1
in vitro differentiated cells
hepatocyte
3
Hepatic endoderm
2
pancreatic PP cell
2
endothelial cell
1
intermediate endothelial cell
1
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