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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
10
total RNA-seq
5
STARR-seq
3
Hi-C
1
whole genome sequencing assay
Assay category
15
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
33
August, 2021
1
March, 2019
Available data
11
bed narrowPeak
11
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
34
Homo sapiens
Biosample type
31
cell line
3
tissue
Organ
28
liver
3
pancreas
2
kidney
Project
34
AMP
Genome assembly (visualization)
14
hg19
GRCh38
Lab
934
AMP-T2D consortium
314
Klaus Kaestner, Upenn
113
Kyle Gaulton, UCSD
67
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
assembly!
GRCh38
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
15
9
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
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