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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ATAC-seq
20
ChIP-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
52
DNA accessibility
20
DNA binding
Target of assay
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
42
May, 2021
18
February, 2023
18
May, 2022
16
January, 2021
Available data
18
bam
18
bed narrowPeak
18
fastq
8
bigWig
Organism
94
Homo sapiens
Biosample type
40
tissue
27
primary cell
22
in vitro differentiated cells
5
cell line
Organ
39
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
51
T1D
43
AMP
Genome assembly (visualization)
26
hg19
Lab
1592
AMP-T2D consortium
147
Klaus Kaestner, Upenn
94
Kyle Gaulton, UCSD
82
Katalin Susztak, Upenn
25
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
assay_slims!
Transcription
BIOSAMPLE
ASSAY
94 results
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ATAC-seq
ChIP-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
tissue
islet of Langerhans
29
6
pancreas
4
thymus
1
primary cell
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
3
1
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 11 more…
in vitro differentiated cells
embryonic stem cell
5
17
cell line
EndoC_BH1
3
2
See all biosamples
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