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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
161
ATAC-seq
154
single cell RNA-seq
42
ChIP-seq
35
snATAC-seq
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
6
WGBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
403
Transcription
228
DNA accessibility
42
DNA binding
17
DNA methylation
10
3D chromatin structure
Target of assay
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
36
June, 2019
31
July, 2019
21
August, 2017
13
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
August, 2021
1
March, 2020
1
March, 2023
1
November, 2018
Available data
406
bam
383
bigWig
336
fastq
270
tsv
79
bed narrowPeak
62
bigBed narrowPeak
34
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
19
zippedFastqFolder
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
2
tagAlign
1
bed bed3
1
tar
Organism
717
Homo sapiens
Biosample type
2079
tissue
717
primary cell
624
cell line
282
in vitro differentiated cells
8
stem cell
Organ
260
epithelium
208
pancreas
31
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
406
AMP
190
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
398
hg19
338
GRCh38
Lab
401
AMP-T2D consortium
190
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
37
inconsistent ontology term
31
audit script error
target.investigated_as!
histone
month_released!
May, 2022
BIOSAMPLE
ASSAY
717 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
DNase-seq
pCHi-C
Hi-C
RRBS
WGBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
13
12
6
1
6
Langerhans cell
52
27
monocyte
54
15
1
1
pancreatic beta cell
21
10
12
6
1
exocrine cell
39
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