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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
98
DNA binding
Target of assay
199
histone modification
histone
109
broad histone mark
88
narrow histone mark
50
control
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
Date released
318
November, 2017
98
August, 2017
70
November, 2018
63
December, 2017
46
October, 2019
44
October, 2018
34
December, 2018
28
May, 2019
25
May, 2021
23
August, 2021
23
May, 2020
20
April, 2019
18
January, 2019
12
June, 2019
8
February, 2018
8
February, 2021
6
September, 2017
5
May, 2024
November, 2019
3
October, 2017
Available data
79
bam
79
fastq
49
bigWig
25
bed narrowPeak
21
bed bed3+
11
tagAlign
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
Organism
97
Homo sapiens
Biosample type
53
tissue
30
in vitro differentiated cells
15
primary cell
Organ
48
connective tissue
28
pancreas
18
adipose tissue
16
liver
12
epithelium
3
musculature of body
Project
98
AMP
Genome assembly (visualization)
51
hg19
49
GRCh38
Lab
98
AMP-T2D consortium
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
histone
month_released!
November, 2019
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ChIP-seq
tissue
liver
16
islet of Langerhans
14
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
skeletal muscle tissue
3
+ See 2 more…
in vitro differentiated cells
adipocyte
30
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
3
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