Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1016
total RNA-seq
272
ChIP-seq
203
ATAC-seq
174
DNase-seq
172
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1204
Transcription
409
DNA accessibility
272
DNA binding
38
DNA methylation
15
3D chromatin structure
Target of assay
608
histone modification
histone
318
narrow histone mark
289
broad histone mark
180
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
227
August, 2021
166
May, 2020
161
August, 2017
161
June, 2019
120
July, 2018
76
July, 2019
66
May, 2022
66
October, 2019
60
February, 2023
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
November, 2019
38
March, 2020
26
November, 2018
23
February, 2020
23
May, 2019
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1389
bam
1225
bigWig
1053
tsv
403
bed narrowPeak
304
fastq
244
bigBed narrowPeak
189
bed bed3+
174
bed broadPeak
172
bigBed broadPeak
157
txt
64
xls
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
2054
Homo sapiens
Biosample type
2057
tissue
849
primary cell
552
cell line
277
in vitro differentiated cells
8
stem cell
Organ
513
connective tissue
455
adipose tissue
393
pancreas
292
liver
279
kidney
218
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1962
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1285
GRCh38
1271
hg19
Lab
1740
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
18
missing controlled_by
target.investigated_as!
histone
month_released!
November, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
2057 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
adipose tissue
382
1
3
3
1
islet of Langerhans
279
20
49
1
7
4
2
1
1
4
liver
167
81
20
2
1
3
1
1
1
1
kidney
49
7
75
13
64
6
1
1
1
bone element
84
+ See 114 more…
See all biosamples
Download