Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
69
DNase-seq
64
single cell RNA-seq
54
total RNA-seq
17
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
151
DNA accessibility
119
Transcription
17
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
130
August, 2021
68
June, 2019
47
September, 2023
17
October, 2019
14
May, 2023
8
February, 2021
5
April, 2019
4
July, 2019
3
December, 2019
2
March, 2020
Available data
141
bed narrowPeak
93
bam
83
bigWig
70
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
298
Homo sapiens
Biosample type
279
tissue
primary cell
19
cell line
Organ
678
liver
574
connective tissue
502
pancreas
456
adipose tissue
298
kidney
285
heart
158
bone element
145
blood vessel
145
vasculature
119
artery
91
epithelium
77
brain
73
limb
60
blood
60
bodily fluid
57
musculature of body
54
eye
25
embryo
20
lung
19
nerve
18
spleen
18
ureter
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
251
AMP
47
KPMP
Genome assembly (visualization)
157
GRCh38
84
hg19
Lab
142
Katalin Susztak, Upenn
107
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
7
audit script error
target.investigated_as!
histone
month_released!
October, 2017
biosample_type!
primary cell
BIOSAMPLE
ASSAY
298 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
13
64
49
7
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 10 more…
cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
HEK293T
2
glomerular visceral epithelial cell
1
1
+ See 1 more…
See all biosamples
Download