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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
total RNA-seq
42
ATAC-seq
31
ChIP-seq
4
Hi-C
4
pCHi-C
2
Capture-C
2
single cell RNA-seq
Assay category
123
Transcription
42
DNA accessibility
31
DNA binding
4
3D chromatin structure
Target of assay
histone
47
histone modification
25
broad histone mark
22
narrow histone mark
16
transcription factor
15
control
5
RNA binding protein
Date released
111
May, 2021
28
August, 2021
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
2
August, 2017
2
December, 2019
Available data
212
bam
181
bigWig
131
tsv
fastq
54
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
5
bigBed narrowPeak
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
206
Homo sapiens
Biosample type
1845
tissue
515
primary cell
213
cell line
206
in vitro differentiated cells
6
stem cell
Organ
30
connective tissue
4
epithelium
2
embryo
2
pancreas
1
heart
Project
206
AMP
Genome assembly (visualization)
166
hg19
133
GRCh38
Lab
172
AMP-T2D consortium
27
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
111
inconsistent ontology term
2
audit script error
target.investigated_as!
histone
month_released!
October, 2017
files.file_type!
fastq
BIOSAMPLE
ASSAY
206 results
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total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
6
17
1
neural progenitor cell
7
10
7
cardiac precursors (cardiac muscle cell)
19
1
1
adipocyte
5
8
2
1
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