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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
100
ATAC-seq
38
ChIP-seq
1
pCHi-C
Assay category
190
Transcription
100
DNA accessibility
38
DNA binding
Target of assay
histone
69
histone modification
42
narrow histone mark
33
control
27
broad histone mark
5
transcription factor
3
RNA binding protein
Date released
707
February, 2021
318
November, 2017
314
May, 2020
259
May, 2021
213
August, 2017
205
February, 2023
200
May, 2022
169
August, 2021
168
July, 2018
119
June, 2019
97
July, 2019
96
October, 2019
88
November, 2018
December, 2017
59
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
46
October, 2018
41
September, 2018
35
December, 2018
26
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
April, 2019
11
October, 2017
11
September, 2017
8
January, 2018
7
August, 2020
7
December, 2019
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
271
bam
238
bigWig
189
tsv
23
tagAlign
5
bed narrowPeak
5
bigBed narrowPeak
Organism
329
Homo sapiens
Biosample type
181
tissue
147
primary cell
1
cell line
Organ
167
liver
15
heart
kidney
Project
284
AMP
45
T1D
Genome assembly (visualization)
238
hg19
193
GRCh38
Lab
284
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
target.investigated_as!
histone
month_released!
December, 2017
organ_slims!
kidney
BIOSAMPLE
ASSAY
329 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
23
heart left ventricle
11
heart
2
heart right ventricle
2
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
HepG2
1
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