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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
ChIP-seq
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
195
DNA accessibility
65
Transcription
27
DNA methylation
12
DNA binding
8
3D chromatin structure
Target of assay
histone
19
histone modification
11
control
11
narrow histone mark
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
213
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
281
bam
276
bigWig
198
bed narrowPeak
193
bigBed narrowPeak
191
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
hdf5
Organism
307
Homo sapiens
Biosample type
240
tissue
67
primary cell
Organ
91
kidney
58
heart
48
brain
45
musculature of body
37
limb
31
epithelium
28
connective tissue
19
vasculature
18
ureter
16
blood vessel
13
adipose tissue
12
liver
10
pancreas
7
eye
5
artery
2
pericardium
Project
307
AMP
Genome assembly (visualization)
270
GRCh38
259
hg19
Lab
307
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
307 results
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Clear Filters
DNase-seq
total RNA-seq
small RNA-seq
RRBS
ChIP-seq
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart
18
2
1
1
muscle of arm
17
kidney
13
1
1
muscle of leg
13
1
brain
12
1
+ See 50 more…
primary cell
cardiac fibroblast
3
1
3
epithelial cell of proximal tubule
1
1
1
2
cardiac muscle cell
1
1
2
retinal pigment epithelial cell
1
1
2
kidney epithelial cell
1
1
1
+ See 28 more…
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