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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
640
total RNA-seq
254
ATAC-seq
234
ChIP-seq
176
DNase-seq
174
single cell RNA-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
16
Hi-C
14
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
828
Transcription
462
DNA accessibility
234
DNA binding
32
DNA methylation
16
3D chromatin structure
Target of assay
561
histone modification
histone
297
narrow histone mark
263
broad histone mark
163
control
72
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
228
August, 2021
166
May, 2020
162
June, 2019
159
February, 2021
136
August, 2017
120
July, 2018
94
February, 2023
73
October, 2019
67
July, 2019
66
May, 2022
47
September, 2023
43
December, 2017
40
May, 2021
39
November, 2019
37
March, 2020
26
May, 2019
25
November, 2018
23
February, 2020
21
October, 2018
20
April, 2019
19
April, 2020
14
May, 2023
12
November, 2017
10
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
1
January, 2019
Available data
1003
bam
825
bigWig
677
tsv
449
bed narrowPeak
262
fastq
240
bigBed narrowPeak
187
bed bed3+
176
bed broadPeak
174
bigBed broadPeak
157
txt
64
xls
51
tagAlign
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1687
Homo sapiens
Biosample type
1689
tissue
849
primary cell
624
cell line
281
in vitro differentiated cells
8
stem cell
Organ
514
connective tissue
adipose tissue
432
pancreas
292
liver
279
kidney
213
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1594
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
940
GRCh38
896
hg19
Lab
1377
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
6
missing controlled_by
target.investigated_as!
histone
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
1689 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
68
20
1
7
4
3
1
1
4
liver
167
20
81
2
1
1
3
1
1
1
kidney
49
75
7
13
64
6
1
1
1
bone element
84
bone tissue
58
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