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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
5
Hi-C
Assay category
8
Transcription
5
3D chromatin structure
Date released
6
February, 2021
4
July, 2019
1
November, 2018
1
October, 2019
1
September, 2018
Available data
2167
bam
1878
bigWig
1199
tsv
1086
fastq
956
bed narrowPeak
642
bigBed narrowPeak
255
bed broadPeak
253
bigBed broadPeak
242
bed bed3+
161
txt
153
zippedFastqFolder
76
tagAlign
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
hic
22
bedpe bed3+
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
13
Homo sapiens
Biosample type
6
primary cell
6
tissue
1
cell line
Organ
5
kidney
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
connective tissue
1
pancreas
Project
13
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
5
audit script error
Audit category:
1
inconsistent assembly
target.investigated_as!
histone
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
13 results
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single cell RNA-seq
Hi-C
primary cell
pancreatic cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
tissue
kidney
5
liver
1
cell line
Panc1
1
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