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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
RRBS
11
WGBS
3
ChIP-seq
1
FAIRE-seq
Assay category
28
DNA methylation
3
DNA binding
1
DNA accessibility
Target of assay
3
transcription factor
1
RNA binding protein
Date released
15
July, 2019
7
November, 2018
6
August, 2017
3
November, 2017
1
October, 2019
Available data
2458
bam
2174
bigWig
1432
tsv
1129
fastq
873
bed narrowPeak
613
bigBed narrowPeak
227
bed broadPeak
225
bigBed broadPeak
218
bed bed3+
161
txt
153
zippedFastqFolder
71
tagAlign
64
xls
28
bed bedMethyl
28
bigBed bedMethyl
20
bedpe bed3+
20
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
32
Homo sapiens
Biosample type
18
tissue
10
primary cell
4
cell line
Organ
heart
7
epithelium
6
liver
6
pancreas
4
kidney
4
musculature of body
3
connective tissue
3
vasculature
2
adipose tissue
2
blood vessel
2
brain
2
spleen
1
eye
1
limb
1
pericardium
1
vein
Project
32
AMP
Genome assembly (visualization)
21
hg19
11
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone
organ_slims!
heart
BIOSAMPLE
ASSAY
32 results
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Clear Filters
RRBS
WGBS
ChIP-seq
FAIRE-seq
tissue
pancreas
1
2
adipose tissue
2
body of pancreas
2
skeletal muscle tissue
2
spleen
2
+ See 7 more…
primary cell
cardiac muscle cell
1
choroid plexus epithelial cell
1
endothelial cell of umbilical vein
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
cell line
HepG2
1
3
See all biosamples
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