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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
total RNA-seq
199
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
41
ChIP-seq
29
DNase-seq
17
pCHi-C
9
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
431
Transcription
285
DNA accessibility
57
DNA methylation
41
DNA binding
9
3D chromatin structure
Target of assay
histone
234
histone modification
121
broad histone mark
113
narrow histone mark
34
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
134
May, 2022
88
February, 2023
88
May, 2021
59
September, 2020
48
February, 2021
48
July, 2018
43
April, 2018
41
September, 2018
34
June, 2019
29
July, 2019
21
August, 2017
12
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
397
bam
375
bigWig
336
fastq
265
tsv
153
zippedFastqFolder
76
bed narrowPeak
60
bigBed narrowPeak
31
bed bed3+
31
bed broadPeak
31
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tagAlign
1
tar
Organism
840
Homo sapiens
Biosample type
1853
tissue
840
primary cell
279
in vitro differentiated cells
241
cell line
8
stem cell
Organ
340
epithelium
288
pancreas
31
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
395
AMP
324
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
388
hg19
330
GRCh38
Lab
390
AMP-T2D consortium
324
Klaus Kaestner, Upenn
125
Kyle Gaulton, UCSD
1
ITG
Audit category:
36
inconsistent ontology term
31
audit script error
target.investigated_as!
histone
organ_slims!
liver
BIOSAMPLE
ASSAY
840 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
31
6
1
Langerhans cell
85
48
pancreatic beta cell
21
23
12
16
6
1
monocyte
54
15
1
1
exocrine cell
39
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