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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
DNase-seq
14
ChIP-seq
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
20
DNA accessibility
14
DNA binding
2
DNA methylation
Target of assay
8
control
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
18
June, 2019
9
November, 2018
7
December, 2018
1
January, 2019
1
March, 2020
1
October, 2017
Available data
36
bam
28
bigWig
26
bed narrowPeak
25
bigBed narrowPeak
19
bed bed3+
19
bed broadPeak
19
bigBed broadPeak
18
fastq
2
bed bedMethyl
2
bigBed bedMethyl
1
tsv
Organism
37
Homo sapiens
Biosample type
37
tissue
Organ
795
pancreas
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
28
GRCh38
26
hg19
Lab
37
AMP-T2D consortium
target.investigated_as!
histone
organ_slims!
liver
BIOSAMPLE
ASSAY
37 results
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DNase-seq
ChIP-seq
WGBS
ATAC-seq
pCHi-C
tissue
spleen
1
14
2
1
1
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
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