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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
178
total RNA-seq
75
single cell RNA-seq
56
ATAC-seq
47
ChIP-seq
10
WGBS
3
DNase-seq
2
FAIRE-seq
Assay category
253
Transcription
61
DNA accessibility
47
DNA binding
10
DNA methylation
Target of assay
histone
100
histone modification
52
broad histone mark
48
narrow histone mark
30
control
17
transcription factor
8
RNA binding protein
Date released
116
August, 2017
40
September, 2018
39
July, 2018
37
February, 2023
34
April, 2018
24
May, 2022
21
October, 2018
19
September, 2020
11
September, 2017
7
August, 2020
7
November, 2018
6
February, 2021
5
October, 2017
3
August, 2018
1
June, 2018
1
March, 2019
Available data
552
bam
481
bigWig
417
tsv
371
fastq
87
bed narrowPeak
80
zippedFastqFolder
42
bigBed narrowPeak
17
bed bed3+
9
bed broadPeak
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
tagAlign
3
cool
1
bedpe
1
hdf5
Organism
370
Homo sapiens
Biosample type
200
primary cell
171
tissue
Organ
421
liver
371
pancreas
206
epithelium
75
connective tissue
59
blood
59
bodily fluid
43
adipose tissue
18
spleen
15
embryo
11
brain
4
vasculature
2
blood vessel
2
musculature of body
Project
302
AMP
69
HPAP
Genome assembly (visualization)
263
hg19
257
GRCh38
Lab
276
AMP-T2D consortium
69
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
Audit category:
6
missing controlled_by
target.investigated_as!
histone
organ_slims!
nerve
BIOSAMPLE
ASSAY
371 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
DNase-seq
FAIRE-seq
primary cell
pancreatic alpha cell
52
12
13
6
6
pancreatic beta cell
21
12
10
6
pancreatic acinar cell
4
9
5
pancreatic ductal cell
4
9
4
pancreatic delta cell
11
+ See 4 more…
tissue
islet of Langerhans
97
6
20
14
1
1
body of pancreas
4
17
2
2
pancreas
4
2
1
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