Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
59
ChIP-seq
13
ATAC-seq
8
snATAC-seq
1
pCHi-C
Assay category
62
Transcription
59
DNA binding
21
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
histone
1
histone modification
1
narrow histone mark
Date released
150
February, 2021
27
December, 2018
17
January, 2019
15
November, 2018
8
February, 2023
8
January, 2021
1
January, 2018
1
May, 2021
Available data
125
bam
112
bigWig
88
txt
61
bed narrowPeak
59
fastq
58
tsv
53
bigBed narrowPeak
4
bed bed3
Organism
227
Homo sapiens
Biosample type
158
tissue
60
cell line
9
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
218
AMP
9
T1D
Genome assembly (visualization)
124
hg19
119
GRCh38
Lab
218
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
target.investigated_as!
histone
BIOSAMPLE
ASSAY
227 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
cell line
GM12878
59
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
See all biosamples
Download