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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
3
WGBS
3
single cell RNA-seq
2
ATAC-seq
2
DNase-seq
1
pCHi-C
Assay category
64
DNA binding
4
DNA accessibility
3
DNA methylation
3
Transcription
Target of assay
39
transcription factor
histone
26
histone modification
25
control
13
narrow histone mark
12
broad histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
46
August, 2017
23
October, 2018
2
July, 2018
1
April, 2018
1
August, 2018
1
November, 2018
1
October, 2017
Available data
559
bam
535
bigWig
478
tsv
75
fastq
40
bed narrowPeak
27
bed bed3+
19
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
6
bed bed3
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
3
tagAlign
1
bedpe bed3+
1
hdf5
Organism
75
Homo sapiens
Biosample type
42
tissue
30
in vitro differentiated cells
3
primary cell
Organ
421
liver
371
pancreas
206
epithelium
75
connective tissue
59
blood
59
bodily fluid
43
adipose tissue
18
spleen
15
embryo
11
brain
4
vasculature
2
blood vessel
2
musculature of body
Project
75
AMP
Genome assembly (visualization)
49
GRCh38
47
hg19
Lab
75
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
target.investigated_as!
histone
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
WGBS
single cell RNA-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
omental fat pad
11
1
1
subcutaneous adipose tissue
12
1
white adipose tissue
12
adipose tissue
1
3
in vitro differentiated cells
adipocyte
28
1
white fat cell
1
primary cell
pancreatic stellate cell
3
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