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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
8
snATAC-seq
2
ATAC-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
73
DNA binding
11
DNA accessibility
2
DNA methylation
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
24
November, 2018
18
January, 2019
8
January, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
77
bam
77
fastq
64
bigWig
61
bed narrowPeak
60
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
87
Homo sapiens
Biosample type
60
cell line
19
tissue
8
primary cell
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
8
T1D
Genome assembly (visualization)
63
GRCh38
62
hg19
Lab
79
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
target.investigated_as!
histone
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
snATAC-seq
ATAC-seq
WGBS
DNase-seq
pCHi-C
cell line
GM12878
59
1
tissue
spleen
14
1
2
1
1
primary cell
peripheral blood mononuclear cell
8
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