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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
total RNA-seq
12
ATAC-seq
10
ChIP-seq
1
GRO-seq
Assay category
18
Transcription
12
DNA accessibility
10
DNA binding
Target of assay
histone
12
histone modification
8
narrow histone mark
7
control
broad histone mark
3
transcription factor
Date released
8
August, 2021
8
February, 2021
8
February, 2023
7
December, 2017
7
February, 2018
2
May, 2021
1
January, 2018
Available data
32
bam
18
bigWig
15
fastq
14
tsv
11
bed narrowPeak
4
bed bed3
4
txt
1
bed bed3+
Organism
41
Homo sapiens
Biosample type
17
in vitro differentiated cells
16
tissue
8
cell line
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
30
hg19
26
GRCh38
1
hg18
Lab
41
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent control read length
target.investigated_as!
histone
broad histone mark
BIOSAMPLE
ASSAY
41 results
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total RNA-seq
ATAC-seq
ChIP-seq
GRO-seq
in vitro differentiated cells
pancreatic endoderm
4
8
1
Hepatic endoderm
2
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 7 more…
cell line
H1-hESC
8
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