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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ATAC-seq
25
ChIP-seq
17
pCHi-C
9
total RNA-seq
1
DNAme array
Assay category
34
DNA accessibility
25
DNA binding
9
Transcription
1
DNA methylation
Target of assay
histone
140
histone modification
76
broad histone mark
64
narrow histone mark
16
transcription factor
9
control
5
RNA binding protein
Date released
252
November, 2017
200
May, 2022
199
June, 2019
189
February, 2023
176
August, 2021
156
February, 2021
125
May, 2020
124
August, 2017
95
October, 2019
86
May, 2021
72
November, 2018
63
December, 2017
59
September, 2020
47
September, 2023
44
October, 2018
43
July, 2019
35
December, 2018
31
November, 2019
28
May, 2019
20
April, 2019
19
April, 2020
18
January, 2019
16
January, 2021
16
March, 2020
15
May, 2023
15
September, 2018
12
November, 2020
11
October, 2017
11
September, 2017
8
February, 2018
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
December, 2019
Available data
191
bam
187
bigWig
tsv
17
bed narrowPeak
5
tagAlign
2
bed bed3+
Organism
86
Homo sapiens
Biosample type
36
primary cell
32
in vitro differentiated cells
16
cell line
2
tissue
Organ
19
pancreas
18
epithelium
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
69
AMP
17
T1D
Genome assembly (visualization)
27
hg19
17
GRCh38
Lab
50
Kyle Gaulton, UCSD
36
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
target.investigated_as!
histone
recombinant protein
files.file_type!
tsv
BIOSAMPLE
ASSAY
86 results
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Clear Filters
ATAC-seq
ChIP-seq
pCHi-C
total RNA-seq
DNAme array
primary cell
monocyte
13
1
1
1
CD8-positive, alpha-beta T cell
3
1
2
CD4-positive, alpha-beta T cell
2
B cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 10 more…
in vitro differentiated cells
embryonic stem cell
5
17
5
cardiomyocytes
3
pancreatic PP cell
2
cell line
EndoC_BH1
16
tissue
pancreas
1
thymus
1
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