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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
29
ChIP-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
29
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
32
histone
histone modification
24
control
20
broad histone mark
12
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
23
October, 2018
12
August, 2017
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
424
bam
405
bigWig
401
tsv
28
fastq
5
bed narrowPeak
5
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
tagAlign
Organism
438
Homo sapiens
Biosample type
436
tissue
2
primary cell
1
in vitro differentiated cells
Organ
647
liver
616
pancreas
555
connective tissue
439
adipose tissue
308
epithelium
219
heart
161
kidney
147
bone element
107
vasculature
104
blood vessel
72
artery
62
brain
59
blood
59
bodily fluid
29
limb
28
musculature of body
26
eye
25
embryo
17
spleen
16
nerve
10
lung
4
skeleton
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
439
AMP
Genome assembly (visualization)
406
GRCh38
404
hg19
Lab
439
AMP-T2D consortium
Audit category:
missing controlled_by
target.investigated_as!
histone modification
assay_slims!
DNA accessibility
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
439 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
subcutaneous abdominal adipose tissue
5
3
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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