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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
Assay category
DNA accessibility
49
DNA binding
Target of assay
49
transcription factor
30
histone
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
47
November, 2017
2
August, 2017
Available data
2218
bam
1950
bigWig
1586
tsv
1026
fastq
474
bed narrowPeak
410
bigBed narrowPeak
157
txt
93
zippedFastqFolder
77
tagAlign
49
bed broadPeak
49
bigBed broadPeak
39
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
49
Homo sapiens
Biosample type
44
cell line
5
primary cell
Organ
44
liver
3
brain
2
epithelium
2
vasculature
1
blood vessel
Project
49
AMP
Genome assembly (visualization)
49
hg19
36
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
2
inconsistent control read length
target.investigated_as!
histone modification
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
cell line
HepG2
44
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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