Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
6
ChIP-seq
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
9
Transcription
6
DNA binding
6
DNA methylation
Target of assay
33
histone
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
35
June, 2019
7
August, 2017
6
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
43
bam
41
bigWig
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
fastq
2
tagAlign
1
txt
Organism
57
Homo sapiens
Biosample type
51
tissue
6
primary cell
Organ
786
pancreas
684
liver
605
connective tissue
459
adipose tissue
423
epithelium
323
kidney
288
heart
160
vasculature
159
bone element
155
blood vessel
121
artery
96
brain
69
limb
68
blood
68
bodily fluid
58
eye
57
musculature of body
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
44
hg19
40
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
target.investigated_as!
histone modification
assay_title!
Hi-C
BIOSAMPLE
ASSAY
57 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
3
1
4
1
1
1
1
psoas muscle
2
1
forelimb muscle
1
+ See 3 more…
primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
See all biosamples
Download