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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
44
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
histone modification
34
broad histone mark
control
15
narrow histone mark
Date released
32
June, 2019
10
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
Available data
49
bam
44
bed narrowPeak
43
bigWig
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
56
Homo sapiens
Biosample type
56
tissue
Organ
742
pancreas
578
liver
571
connective tissue
435
adipose tissue
401
epithelium
310
kidney
276
heart
159
bone element
143
vasculature
139
blood vessel
112
artery
68
brain
62
blood
62
bodily fluid
57
eye
57
musculature of body
56
limb
20
lung
18
embryo
18
ureter
16
skeleton
11
spleen
8
nerve
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
56
AMP
Genome assembly (visualization)
49
GRCh38
48
hg19
Lab
56
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
histone modification
control
assay_title!
STARR-seq
BIOSAMPLE
ASSAY
56 results
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DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
tibial nerve
2
1
5
gastrocnemius medialis
1
4
tibial artery
2
1
1
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