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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
18
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
18
DNA binding
8
DNA accessibility
6
DNA methylation
3
Transcription
Target of assay
32
histone
histone modification
20
broad histone mark
12
narrow histone mark
12
transcription factor
6
control
Date released
25
August, 2017
October, 2018
3
July, 2019
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
23
bam
23
bigWig
20
fastq
6
bed bed3+
6
bed narrowPeak
4
bigBed narrowPeak
4
tsv
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
37
Homo sapiens
Biosample type
36
tissue
1
in vitro differentiated cells
1
primary cell
Organ
499
liver
377
pancreas
300
epithelium
264
kidney
224
heart
109
connective tissue
104
vasculature
99
blood vessel
97
bone element
82
brain
68
blood
68
bodily fluid
66
limb
65
artery
57
musculature of body
39
eye
38
adipose tissue
20
lung
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
23
hg19
22
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
histone modification
assay_title!
total RNA-seq
month_released!
October, 2018
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
white adipose tissue
12
adipose tissue
1
3
3
1
subcutaneous abdominal adipose tissue
5
3
omental fat pad
1
1
2
subcutaneous adipose tissue
1
1
1
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in vitro differentiated cells
white fat cell
1
primary cell
mesenchymal stem cell of adipose
1
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