Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ATAC-seq
23
DNase-seq
17
WGBS
4
ChIP-seq
1
Hi-C
Assay category
145
DNA accessibility
17
DNA methylation
4
DNA binding
1
3D chromatin structure
Target of assay
53
histone
histone modification
37
broad histone mark
16
narrow histone mark
4
transcription factor
3
recombinant protein
1
RNA binding protein
Date released
64
August, 2021
35
February, 2023
23
June, 2019
11
May, 2023
9
July, 2019
9
November, 2018
7
August, 2020
3
September, 2020
2
August, 2017
2
November, 2017
1
March, 2023
1
October, 2017
Available data
126
bed narrowPeak
64
xls
56
bigWig
46
bam
27
bigBed narrowPeak
24
fastq
23
bed bed3+
23
bed broadPeak
23
bigBed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
1
hic
Organism
167
Homo sapiens
Biosample type
144
tissue
18
primary cell
5
cell line
Organ
82
kidney
44
heart
37
blood vessel
37
vasculature
35
artery
16
epithelium
16
pancreas
12
brain
5
liver
3
connective tissue
2
adipose tissue
2
spleen
1
limb
1
musculature of body
Project
156
AMP
10
HPAP
1
ITG
Genome assembly (visualization)
hg19
2318
GRCh38
5
hg18
Lab
81
AMP-T2D consortium
75
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
ITG
target.investigated_as!
histone modification
assembly!
hg19
BIOSAMPLE
ASSAY
167 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
DNase-seq
WGBS
ChIP-seq
Hi-C
tissue
kidney
75
coronary artery
35
body of pancreas
2
2
heart
2
1
adipose tissue
2
+ See 21 more…
primary cell
pancreatic alpha cell
7
pancreatic beta cell
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
+ See 3 more…
cell line
HepG2
1
4
See all biosamples
Download