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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
58
DNA binding
9
DNA accessibility
Target of assay
50
transcription factor
10
RNA binding protein
9
chromatin remodeller
6
control
1
histone
histone modification
1
narrow histone mark
Date released
26
December, 2018
17
January, 2019
15
November, 2018
8
January, 2021
1
January, 2018
Available data
58
bam
58
fastq
53
bigWig
52
bed narrowPeak
52
bigBed narrowPeak
Organism
67
Homo sapiens
Biosample type
59
cell line
8
primary cell
Organ
795
pancreas
661
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
67
blood
67
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
59
AMP
8
T1D
Genome assembly (visualization)
53
hg19
52
GRCh38
Lab
59
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
inconsistent control
target.investigated_as!
histone modification
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
58
1
primary cell
peripheral blood mononuclear cell
8
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