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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
3
ATAC-seq
3
ChIP-seq
2
total RNA-seq
1
DNase-seq
1
RRBS
1
pCHi-C
Assay category
4
DNA accessibility
3
DNA binding
2
Transcription
1
DNA methylation
Target of assay
8
histone
histone modification
4
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
4
February, 2023
4
June, 2019
1
July, 2019
1
March, 2020
1
November, 2019
Available data
5
bam
3
bed bed3+
3
bed narrowPeak
2
bigBed narrowPeak
2
bigWig
1
bed bedMethyl
1
bed broadPeak
1
bigBed bedMethyl
1
bigBed broadPeak
1
tsv
Organism
11
Homo sapiens
Biosample type
5
primary cell
4
in vitro differentiated cells
1
stem cell
1
tissue
Organ
84
bone element
75
epithelium
69
pancreas
21
kidney
11
connective tissue
4
embryo
4
heart
2
musculature of body
1
adipose tissue
1
brain
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
11
AMP
Genome assembly (visualization)
6
hg19
3
GRCh38
Lab
11
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
11 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
RRBS
pCHi-C
primary cell
cardiac fibroblast
2
1
1
mesenchymal stem cell
1
in vitro differentiated cells
immature adipocyte
2
2
stem cell
mesenchymal stem cell
1
tissue
adipose tissue(adipose white tissue)
1
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