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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
Assay category
20
DNA binding
Target of assay
31
histone
histone modification
20
transcription factor
16
narrow histone mark
15
broad histone mark
8
chromatin remodeller
4
RNA binding protein
1
recombinant protein
Date released
7
November, 2017
6
August, 2017
4
December, 2017
3
November, 2018
Available data
20
bam
20
bed narrowPeak
20
bigWig
20
fastq
10
bigBed narrowPeak
4
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
20
Homo sapiens
Biosample type
10
cell line
10
in vitro differentiated cells
Organ
10
liver
6
connective tissue
1
embryo
Project
20
AMP
Genome assembly (visualization)
20
hg19
19
GRCh38
Lab
20
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
20
inconsistent control read length
2
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
histone modification
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
cell line
HepG2
10
in vitro differentiated cells
adipocyte
6
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
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